Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation
Lommer, Markus, Roy, Alexandra-Sophie, Schilhabel, M., Schreiber, Stefan, Rosenstiel, Philip and LaRoche, Julie (2010) Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation BMC Genomics, 11 . p. 718. DOI 10.1186/1471-2164-11-718.
1471-2164-11-718.pdf - Accepted Version
Although the importance and widespread occurrence of iron limitation in the contemporary ocean is well documented, we still know relatively little about genetic adaptation of phytoplankton to these environments. Compared to its coastal relative Thalassiosira pseudonana, the oceanic diatom Thalassiosira oceanica is highly tolerant to iron limitation. The adaptation to low-iron conditions in T. oceanica has been attributed to a decrease in the photosynthetic components that are rich in iron. Genomic information on T. oceanica may shed light on the genetic basis of the physiological differences between the two species.
The complete 141790 bp sequence of the T. oceanica chloroplast genome [GenBank: GU323224], assembled from massively parallel pyrosequencing (454) shotgun reads, revealed that the petF gene encoding for ferredoxin, which is localized in the chloroplast genome in T. pseudonana and other diatoms, has been transferred to the nucleus in T. oceanica. The iron-sulfur protein ferredoxin, a key element of the chloroplast electron transport chain, can be replaced by the iron-free flavodoxin under iron-limited growth conditions thereby contributing to a reduction in the cellular iron requirements. From a comparison to the genomic context of the T. pseudonana petF gene, the T. oceanica ortholog can be traced back to its chloroplast origin. The coding potential of the T. oceanica chloroplast genome is comparable to that of T. pseudonana and Phaeodactylum tricornutum, though a novel expressed ORF appears in the genomic region that has been subjected to rearrangements linked to the petF gene transfer event.
The transfer of the petF from the cp to the nuclear genome in T. oceanica represents a major difference between the two closely related species. The ability of T. oceanica to tolerate iron limitation suggests that the transfer of petF from the chloroplast to the nuclear genome might have contributed to the ecological success of this species.
|Keywords:||Marine Biology; gene; genomics; genetic adaptation of phytoplankton; PHAEODACTYLUM-TRICORNUTUM; THALASSIOSIRA-PSEUDONANA; CHLOROPLAST GENOMES; PLANKTONIC DIATOMS; MARINE DIATOMS; EVOLUTION; ORGANELLES; PHYTOPLANKTON; VISUALIZATION; ORGANIZATION|
|Research affiliation:||Kiel University > Faculty of Medicine > Institute of Clinical Molecular Biology
OceanRep > The Future Ocean - Cluster of Excellence
OceanRep > GEOMAR > FB2 Marine Biogeochemistry > FB2-BI Biological Oceanography
|Projects:||BIOACID, Future Ocean|
|Date Deposited:||22 Dec 2010 08:20|
|Last Modified:||20 Jun 2016 12:07|
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