Items where Author is "Worden, Alexandra Z."

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Articles in a Scientific Journal - peer-reviewed

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Zimmerman, A. E., Bachy, C., Ma, X., Roux, S., Jang, H. B., Sullivan, M. B., Waldbauer, J. R. and Worden, A. Z. (2019) Closely related viruses of the marine picoeukaryotic alga Ostreococcus lucimarinus exhibit different ecological strategies . Open Access Environmental Microbiology, 21 (6). pp. 2148-2170. DOI 10.1111/1462-2920.14608.

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Bachy, C., Charlesworth, C. J., Chan, A. M., Finke, J. F., Wong, C. H., Wei, C. L., Sudek, S., Coleman, M. L., Suttle, C. A. and Worden, A. Z. (2018) Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions. Open Access Environmental Microbiology, 20 (8). pp. 2898-2912. DOI 10.1111/1462-2920.14273.

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Guo, J., Wilken, S., Jimenez, V., Choi, C. J., Ansong, C., Dannebaum, R., Sudek, L., Milner, D. S., Bachy, C., Reistetter, E. N., Elrod, V. A., Klimov, D., Purvine, S. O., Wei, C. L., Kunde-Ramamoorthy, G., Richards, T. A., Goodenough, U., Smith, R. D., Callister, S. J. and Worden, A. Z. (2018) Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation. Nature Microbiology, 3 (7). pp. 781-790. DOI 10.1038/s41564-018-0178-7.

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Joo, S., Wang, M. H., Lui, G., Lee, J., Barnas, A., Kim, E., Sudek, S., Worden, A. Z. and Lee, J. H. (2018) Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida. Open Access BMC Biology, 16 (1). Art.Nr. 136. DOI 10.1186/s12915-018-0605-5.

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Okamoto, N., Gawryluk, R. M. R., del Campo, J., Strassert, J. F. H., Lukeš, J., Richards, T. A., Worden, A. Z., Santoro, A. E. and Keeling, P. J. (In Press / Accepted) A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp.. Journal of Eukaryotic Microbiology . DOI 10.1111/jeu.12679.

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Orsi, W. D., Wilken, S., del Campo, J., Heger, T., James, E., Richards, T. A., Keeling, P. J., Worden, A. Z. and Santoro, A. E. (2018) Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing. Environmental Microbiology, 20 (2). pp. 815-827. DOI 10.1111/1462-2920.14018.

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Strassert, J. F. H., Hehenberger, E., del Campo, J., Okamoto, N., Kolisko, M., Richards, T. A., Worden, A. Z., Santoro, A. E. and Keeling, P. J. (2018) Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods. Journal of Eukaryotic Microbiology . DOI 10.1111/jeu.12701.

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Strassert, J. F. H., Karnkowska, A., Hehenberger, E., Del Campo, J., Kolisko, M., Okamoto, N., Burki, F., Janouškovec, J., Poirier, C., Leonard, G., Hallam, S. J., Richards, T. A., Worden, A. Z., Santoro, A. E. and Keeling, P. J. (2018) Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates. Open Access ISME Journal, 12 (1). pp. 304-308. DOI 10.1038/ismej.2017.167.

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Caron, D. A., Alexander, H., Allen, A. E., Archibald, J. M., Armbrust, E. V., Bachy, C., Bell, C. J., Bharti, A., Dyhrman, S. T., Guida, S. M., Heidelberg, K. B., Kaye, J. Z., Metzner, J., Smith, S. R. and Worden, A. Z. (2017) Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews Microbiology, 15 (1). pp. 6-20. DOI 10.1038/nrmicro.2016.160.

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Choi, C. J., Bachy, C., Jaeger, G. S., Poirier, C., Sudek, L., Sarma, V. V. S. S., Mahadevan, A., Giovannoni, S. J. and Worden, A. Z. (2017) Newly discovered deep-branching marine plastid lineages are numerically rare but globally distributed. Open Access Current Biology, 27 (1). R15-R16. DOI 10.1016/j.cub.2016.11.032.

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Clayton, S., Lin, Y. C., Follows, M. J. and Worden, A. Z. (2017) Co-existence of distinct Ostreococcus ecotypes at an oceanic front. Open Access Limnology and Oceanography, 62 (1). pp. 75-88. DOI 10.1002/lno.10373.

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Cuvelier, M. L., Guo, J., Ortiz, A. C., Van Baren, M. J., Tariq, M. A., Partensky, F. and Worden, A. Z. (2017) Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress. Open Access PLoS ONE, 12 (3). e0172135. DOI 10.1371/journal.pone.0172135.

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Limardo, A. J., Sudek, S., Choi, C. J., Poirier, C., Rii, Y. M., Blum, M., Roth, R., Goodenough, U., Church, M. J. and Worden, A. Z. (2017) Quantitative biogeography of picoprasinophytes establishes ecotype distributions and significant contributions to marine phytoplankton. Open Access Environmental Microbiology, 19 (8). pp. 3219-3234. DOI 10.1111/1462-2920.13812.

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Mock, T., Otillar, R. P., Strauss, J., McMullan, M., Paajanen, P., Schmutz, J., Salamov, A., Sanges, R., Toseland, A., Ward, B. J., Allen, A. E., Dupont, C. L., Frickenhaus, S., Maumus, F., Veluchamy, A., Wu, T., Barry, K. W., Falciatore, A., Ferrante, M. I., Fortunato, A. E., Glöckner, G., Gruber, A., Hipkin, R., Janech, M. G., Kroth, P. G., Leese, F., Lindquist, E. A., Lyon, B. R., Martin, J., Mayer, C., Parker, M., Quesneville, H., Raymond, J. A., Uhlig, C., Valas, R. E., Valentin, K. U., Worden, A. Z., Armbrust, E. V., Clark, M. D., Bowler, C., Green, B. R., Moulton, V., Van Oosterhout, C. and Grigoriev, I. V. (2017) Evolutionary genomics of the cold-Adapted diatom Fragilariopsis cylindrus. Open Access Nature, 541 (7638). pp. 536-540. DOI 10.1038/nature20803.

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Gawryluk, R. M. R., del Campo, J., Okamoto, N., Strassert, J. F. H., Lukeš, J., Richards, T. A., Worden, A. Z., Santoro, A. E. and Keeling, P. J. (2016) Morphological Identification and Single-Cell Genomics of Marine Diplonemids. Open Access Current Biology, 26 (22). pp. 3053-3059. DOI 10.1016/j.cub.2016.09.013.

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Gregory, A. C., Solonenko, S. A., Ignacio-Espinoza, J. C., LaButti, K., Copeland, A., Sudek, S., Maitland, A., Chittick, L., dos Santos, F., Weitz, J. S., Worden, A. Z., Woyke, T. and Sullivan, M. B. (2016) Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer. Open Access BMC Genomics, 17 (1). Art.Nr. 930. DOI 10.1186/s12864-016-3286-x.

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Monier, A., Worden, A. Z. and Richards, T. A. (2016) Phylogenetic diversity and biogeography of the Mamiellophyceae lineage of eukaryotic phytoplankton across the oceans. Environmental Microbiology Reports, 8 (4). pp. 461-469. DOI 10.1111/1758-2229.12390.

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Orsi, W. D., Smith, J. M., Liu, S., Liu, Z., Sakamoto, C. M., Wilken, S., Poirier, C., Richards, T. A., Keeling, P. J., Worden, A. Z. and Santoro, A. E. (2016) Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean. The ISME Journal, 10 (9). pp. 2158-2173. DOI 10.1038/ismej.2016.20.

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Simmons, M. P., Sudek, S., Monier, A., Limardo, A. J., Jimenez, V., Perle, C. R., Elrod, V. A., Pennington, J. T. and Worden, A. Z. (2016) Abundance and biogeography of picoprasinophyte ecotypes and other phytoplankton in the eastern North Pacific Ocean. Open Access Applied and Environmental Microbiology, 82 (6). pp. 1693-1705. DOI 10.1128/AEM.02730-15.

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Waltman, P. H., Guo, J., Reistetter, E. N., Purvine, S., Ansong, C. K., Van Baren, M. J., Wong, C. H., Wei, C. L., Smith, R. D., Callister, S. J., Stuart, J. M. and Worden, A. Z. (2016) Identifying aspects of the post-transcriptional program governing the proteome of the green alga Micromonas pusilla. Open Access PLoS ONE, 11 (7). e0155839. DOI 10.1371/journal.pone.0155839.

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Worden, A. Z. and Wilken, S. (2016) A plankton bloom shifts as the ocean warms. Science, 354 (6310). pp. 287-288. DOI 10.1126/science.aaj1751.

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van Baren, M. J., Bachy, C., Reistetter, E. N., Purvine, S. O., Grimwood, J., Sudek, S., Yu, H., Poirier, C., Deerinck, T. J., Kuo, A., Grigoriev, I. V., Wong, C. H., Smith, R. D., Callister, S. J., Wei, C. L., Schmutz, J. and Worden, A. Z. (2016) Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. Open Access BMC Genomics, 17 (1). Art.Nr. 267. DOI 10.1186/s12864-016-2585-6.

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Derelle, E., Monier, A., Cooke, R., Worden, A. Z., Grimsley, N. and Moreau, H. (2015) Diversity of viruses infecting the green microalga Ostreococcus lucimarinus. Journal of Virology, 89 (11). pp. 5812-5821. DOI 10.1128/JVI.00246-15.

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Limardo, A. J. and Worden, A. Z. (2015) Microbiology: Exclusive networks in the sea. Nature, 522 (7554). pp. 36-37. DOI 10.1038/nature14530.

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Orsi, W. D., Smith, J. M., Wilcox, H. M., Swalwell, J. E., Carini, P., Worden, A. Z. and Santoro, A. E. (2015) Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. Open Access ISME Journal, 9 (8). pp. 1747-1763. DOI 10.1038/ismej.2014.260.

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Ribalet, F., Swalwell, J., Clayton, S., Jiménez, V., Sudek, S., Lin, Y., Johnson, Z. I., Worden, A. Z. and Armbrust, E. V. (2015) Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. Open Access Proceedings of the National Academy of Sciences of the United States of America (PNAS), 112 (26). pp. 8008-8012. DOI 10.1073/pnas.1424279112.

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Simmons, M. P., Bachy, C., Sudek, S., Van Baren, M. J., Sudek, L., Ares, M. and Worden, A. Z. (2015) Intron invasions trace algal speciation and reveal nearly identical arctic and antarctic micromonas populations. Open Access Molecular Biology and Evolution, 32 (9). pp. 2219-2235. DOI 10.1093/molbev/msv122.

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Sudek, S., Everroad, R. C., Gehman, A. M., Smith, J. M., Poirier, C. L., Chavez, F. P. and Worden, A. Z. (2015) Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean. Open Access Environmental Microbiology, 17 (10). pp. 3692-3707. DOI 10.1111/1462-2920.12742.

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Worden, A. Z., Follows, M. J., Giovannoni, S. J., Wilken, S., Zimmerman, A. E. and Keeling, P. J. (2015) Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes. Science, 347 (6223). Art.Nr. 1257594. DOI 10.1126/science.1257594.

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Ševčíková, T., Horák, A., Klimeš, V., Zbránková, V., Demir-Hilton, E., Sudek, S., Jenkins, J., Schmutz, J., Přibyl, P., Fousek, J., Vlček, Č., Lang, B. F., Oborník, M., Worden, A. Z. and Eliáš, M. (2015) Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?. Open Access Scientific Reports, 5 (1). Art.Nr. 10134. DOI 10.1038/srep10134.

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Bachy, C. and Worden, A. Z. (2014) Microbial ecology: Finding structure in the rare biosphere. Open Access Current Biology, 24 (8). R315-R317. DOI 10.1016/j.cub.2014.03.029.

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Duanmu, D., Bachy, C., Sudek, S., Wong, C. H., Jiménez, V., Rockwell, N. C., Martin, S. S., Ngan, C. Y., Reistetter, E. N., Van Baren, M. J., Price, D. C., Wei, C. L., Reyes-Prieto, A., Lagarias, J. C. and Worden, A. Z. (2014) Marine algae and land plants share conserved phytochrome signaling systems. Open Access Proceedings of the National Academy of Sciences of the United States of America (PNAS), 111 (44). pp. 15827-15832. DOI 10.1073/pnas.1416751111.

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Keeling, P. J., Burki, F., Wilcox, H. M., Allam, B., Allen, E. E., Amaral-Zettler, L. A., Armbrust, E. V., Archibald, J. M., Bharti, A. K., Bell, C. J., Beszteri, B., Bidle, K. D., Cameron, C. T., Campbell, L., Caron, D. A., Cattolico, R. A., Collier, J. L., Coyne, K., Davy, S. K., Deschamps, P., Dyhrman, S. T., Edvardsen, B., Gates, R. D., Gobler, C. J., Greenwood, S. J., Guida, S. M., Jacobi, J. L., Jakobsen, K. S., James, E. R., Jenkins, B., John, U., Johnson, M. D., Juhl, A. R., Kamp, A., Katz, L. A., Kiene, R., Kudryavtsev, A., Leander, B. S., Lin, S., Lovejoy, C., Lynn, D., Marchetti, A., McManus, G., Nedelcu, A. M., Menden-Deuer, S., Miceli, C., Mock, T., Montresor, M., Moran, M. A., Murray, S., Nadathur, G., Nagai, S., Ngam, P. B., Palenik, B., Pawlowski, J., Petroni, G., Piganeau, G., Posewitz, M. C., Rengefors, K., Romano, G., Rumpho, M. E., Rynearson, T., Schilling, K. B., Schroeder, D. C., Simpson, A. G. B., Slamovits, C. H., Smith, D. R., Smith, G. J., Smith, S. R., Sosik, H. M., Stief, P., Theriot, E., Twary, S. N., Umale, P. E., Vaulot, D., Wawrik, B., Wheeler, G. L., Wilson, W. H., Xu, Y., Zingone, A. and Worden, A. Z. (2014) The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. Open Access PLoS Biology, 12 (6). e1001889. DOI 10.1371/journal.pbio.1001889.

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McRose, D., Guo, J., Monier, A., Sudek, S., Wilken, S., Yan, S., Mock, T., Archibald, J. M., Begley, T. P., Reyes-Prieto, A. and Worden, A. Z. (2014) Alternatives to vitamin B 1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages. Open Access The ISME Journal, 8 (12). pp. 2517-2529. DOI 10.1038/ismej.2014.146.

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Rockwell, N. C., Duanmu, D., Martin, S. S., Bachy, C., Price, D. C., Bhattacharya, D., Worden, A. Z. and Lagarias, J. C. (2014) Eukaryotic algal phytochromes span the visible spectrum. Open Access Proceedings of the National Academy of Sciences of the United States of America (PNAS), 111 (10). pp. 3871-3876. DOI 10.1073/pnas.1401871111.

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Monier, A., Sudek, S., Fast, N. M. and Worden, A. Z. (2013) Gene invasion in distant eukaryotic lineages: Discovery of mutually exclusive genetic elements reveals marine biodiversity. Open Access The ISME Journal, 7 (9). pp. 1764-1774. DOI 10.1038/ismej.2013.70.

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Read, B. A., Kegel, J., Klute, M. J., Kuo, A., Lefebvre, S. C., Maumus, F., Mayer, C., Miller, J., Monier, A., Salamov, A., Young, J., Aguilar, M., Claverie, J. M., Frickenhaus, S., Gonzalez, K., Herman, E. K., Lin, Y. C., Napier, J., Ogata, H., Sarno, A. F., Shmutz, J., Schroeder, D., De Vargas, C., Verret, F., Von Dassow, P., Valentin, K., Van De Peer, Y., Wheeler, G., Dacks, J. B., Delwiche, C. F., Dyhrman, S. T., Glöckner, G., John, U., Richards, T., Worden, A. Z., Zhang, X., Grigoriev, I. V., Allen, A. E., Bidle, K., Borodovsky, M., Bowler, C., Brownlee, C., Mark Cock, J., Elias, M., Gladyshev, V. N., Groth, M., Guda, C., Hadaegh, A., Iglesias-Rodriguez, M. D., Jenkins, J., Jones, B. M., Lawson, T., Leese, F., Lindquist, E., Lobanov, A., Lomsadze, A., Malik, S. B., Marsh, M. E., MacKinder, L., Mock, T., Mueller-Roeber, B., Pagarete, A., Parker, M., Probert, I., Quesneville, H., Raines, C., Rensing, S. A., Riaño-Pachón, D. M., Richier, S., Rokitta, S., Shiraiwa, Y., Soanes, D. M., Van Der Giezen, M., Wahlund, T. M., Williams, B., Wilson, W., Wolfe, G. and Wurch, L. L. (2013) Pan genome of the phytoplankton Emiliania underpins its global distribution. Open Access Nature, 499 (7457). pp. 209-213. DOI 10.1038/nature12221.

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Santoro, A. E., Sakamoto, C. M., Smith, J. M., Plant, J. N., Gehman, A. L., Worden, A. Z., Johnson, K. S., Francis, C. A. and Casciotti, K. L. (2013) Measurements of nitrite production in and around the primary nitrite maximum in the central California Current. Open Access Biogeosciences (BG), 10 (11). pp. 7395-7410. DOI 10.5194/bg-10-7395-2013.

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Vergin, K. L., Beszteri, B., Monier, A., Cameron Thrash, J., Temperton, B., Treusch, A. H., Kilpert, F., Worden, A. Z. and Giovannoni, S. J. (2013) High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. The ISME Journal, 7 (7). pp. 1322-1332. DOI 10.1038/ismej.2013.32.

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Curtis, B. A., Tanifuji, G., Maruyama, S., Gile, G. H., Hopkins, J. F., Eveleigh, R. J. M., Nakayama, T., Malik, S. B., Onodera, N. T., Slamovits, C. H., Spencer, D. F., Lane, C. E., Gray, M. W., Archibald, J. M., Burki, F., Hirakawa, Y., Reyes-Prieto, A., Keeling, P. J., Fast, N. M., Green, B. R., Grisdale, C. J., Gruber, A., Kroth, P. G., Irimia, M., Arias, M. C., Ball, S. G., Kuo, A., Schmutz, J., Grimwood, J., Lindquist, E., Lucas, S., Salamov, A., Grigoriev, I. V., Rensing, S. A., Symeonidi, A., Elias, M., Herman, E. K., Klute, M. J., Dacks, J. B., Oborník, M., Kořený, L., Durnford, D. G., Neilson, J. A. D., Armbrust, E. V., Rocap, G., Aves, S. J., Liu, Y., Beiko, R. G., Coutinho, P., Henrissat, B., Hempel, F., Maier, U. G., Zauner, S., Häppner, M. P., Ishida, K. I., Shirato, S., Suzuki, S., Kim, E., Richards, T. A., Mc Rose, D., Worden, A. Z., Mock, T., Poole, A. M., Pritham, E. J., Roy, S. W., Schaack, S., Bell, C., Bharti, A. K., Crow, J. A., Kramer, R. and Mc Fadden, G. I. (2012) Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Open Access Nature, 492 (7427). pp. 59-65. DOI 10.1038/nature11681.

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Lin, Y. C., Campbell, T., Chung, C. C., Gong, G. C., Chiang, K. P. and Worden, A. Z. (2012) Distribution patterns and phylogeny of marine stramenopiles in the North Pacific Ocean. Applied and Environmental Microbiology, 78 (9). pp. 3387-3399. DOI 10.1128/AEM.06952-11.

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Monier, A., Welsh, R. M., Gentemann, C., Weinstock, G., Sodergren, E., Armbrust, E. V., Eisen, J. A. and Worden, A. Z. (2012) Phosphate transporters in marine phytoplankton and their viruses: Cross-domain commonalities in viral-host gene exchanges. Open Access Environmental Microbiology, 14 (1). pp. 162-176. DOI 10.1111/j.1462-2920.2011.02576.x.

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Treusch, A. H., Demir-Hilton, E., Vergin, K. L., Worden, A. Z., Carlson, C. A., Donatz, M. G., Burton, R. M. and Giovannoni, S. J. (2012) Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids. The ISME Journal, 6 (3). pp. 481-492. DOI 10.1038/ismej.2011.117.

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Worden, A. Z., Janouskovec, J., McRose, D., Engman, A., Welsh, R. M., Malfatti, S., Tringe, S. G. and Keeling, P. J. (2012) Global distribution of a wild alga revealed by targeted metagenomics. Open Access Current Biology, 22 (17). R675-R677. DOI 10.1016/j.cub.2012.07.054.

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Demir-Hilton, E., Sudek, S., Cuvelier, M. L., Gentemann, C. L., Zehr, J. P. and Worden, A. Z. (2011) Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus. The ISME Journal, 5 (7). pp. 1095-1107. DOI 10.1038/ismej.2010.209.

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Kim, E., Harrison, J. W., Sudek, S., Jones, M. D. M., Wilcox, H. M., Richards, T. A., Worden, A. Z. and Archibald, J. M. (2011) Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Open Access Proceedings of the National Academy of Sciences of the United States of America (PNAS), 108 (4). pp. 1496-1500. DOI 10.1073/pnas.1013337108.

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Paerl, R. W., Johnson, K. S., Welsh, R. M., Worden, A. Z., Chavez, F. P. and Zehr, J. P. (2011) Differential distributions of Synechococcus subgroups across the California current system. Open Access Frontiers in Microbiology, 2 . Art.Nr. 59. DOI 10.3389/fmicb.2011.00059.

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Worden, A. Z., Dupont, C. and Allen, A. E. (2011) Genomes of uncultured eukaryotes: Sorting FACS from fiction. Open Access Genome Biology, 12 (6). Art.Nr. 117. DOI 10.1186/gb-2011-12-6-117.

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Cuvelier, M. L., Allen, A. E., Monier, A., McCrow, J. P., Messié, M., Tringe, S. G., Woyke, T., Welsh, R. M., Ishoey, T., Lee, J. H., Binder, B. J., DuPont, C. L., Latasa, M., Guigand, C., Buck, K. R., Hilton, J., Thiagarajan, M., Caler, E., Read, B., Lasken, R. S., Chavez, F. P. and Worden, A. Z. (2010) Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Open Access Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107 (33). pp. 14679-14684. DOI 10.1073/pnas.1001665107.

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McDonald, S. M., Plant, J. N. and Worden, A. Z. (2010) The mixed lineage nature of nitrogen transport and assimilation in marine eukaryotic phytoplankton: A case study of Micromonas. Open Access Molecular Biology and Evolution, 27 (10). pp. 2268-2283. DOI 10.1093/molbev/msq113.

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Worden, A. Z. and Allen, A. E. (2010) The voyage of the microbial eukaryote. Current Opinion in Microbiology, 13 (5). pp. 652-660. DOI 10.1016/j.mib.2010.08.001.

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Caron, D. A., Worden, A. Z., Countway, P. D., Demir, E. and Heidelberg, K. B. (2009) Protists are microbes too: A perspective. The ISME Journal, 3 (1). pp. 4-12. DOI 10.1038/ismej.2008.101.

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Worden, A. Z., Lee, J. H., Mock, T., Rouzé, P., Simmons, M. P., Aerts, A. L., Allen, A. E., Cuvelier, M. L., Derelle, E., Everett, M. V., Foulon, E., Grimwood, J., Gundlach, H., Henrissat, B., Napoli, C., McDonald, S. M., Parker, M. S., Rombauts, S., Salamov, A., Von Dassow, P., Badger, J. H., Coutinho, P. M., Demir, E., Dubchak, I., Gentemann, C., Eikrem, W., Gready, J. E., John, U., Lanier, W., Lindquist, E. A., Lucas, S., Mayer, K. F. X., Moreau, H., Not, F., Otillar, R., Panaud, O., Pangilinan, J., Paulsen, I., Piegu, B., Poliakov, A., Robbens, S., Schmutz, J., Toulza, E., Wyss, T., Zelensky, A., Zhou, K., Armbrust, E. V., Bhattacharya, D., Goodenough, U. W., Van De Peer, Y. and Grigoriev, I. V. (2009) Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes micromonas. Science, 324 (5924). pp. 268-272. DOI 10.1126/science.1167222.

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Cuvelier, M. L., Ortiz, A., Kim, E., Moehlig, H., Richardson, D. E., Heidelberg, J. F., Archibald, J. M. and Worden, A. Z. (2008) Widespread distribution of a unique marine protistan lineage. Open Access Environmental Microbiology, 10 (6). pp. 1621-1634. DOI 10.1111/j.1462-2920.2008.01580.x.

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Deschamps, P., Moreau, H., Worden, A. Z., Dauvillée, D. and Ball, S. G. (2008) Early gene duplication within Chloroplastida and its correspondence with relocation of starch metabolism to chloroplasts. Open Access Genetics, 178 (4). pp. 2373-2387. DOI 10.1534/genetics.108.087205.

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Guillou, L., Viprey, M., Chambouvet, A., Welsh, R. M., Kirkham, A. R., Massana, R., Scanlan, D. J. and Worden, A. Z. (2008) Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environmental Microbiology, 10 (12). pp. 3349-3365. DOI 10.1111/j.1462-2920.2008.01731.x.

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Robbens, S., Rouzé, P., Cock, J. M., Spring, J., Worden, A. Z. and Van De Peer, Y. (2008) The FTO gene, implicated in human obesity, is found only in vertebrates and marine algae. Journal of Molecular Evolution, 66 (1). pp. 80-84. DOI 10.1007/s00239-007-9059-z.

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Not, F., Gausling, R., Azam, F., Heidelberg, J. F. and Worden, A. Z. (2007) Vertical distribution of picoeukaryotic diversity in the Sargasso Sea. Environmental Microbiology, 9 (5). pp. 1233-1252. DOI 10.1111/j.1462-2920.2007.01247.x.

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Sherr, B. F., Sherr, E. B., Caron, D. A., Vaulot, D. and Worden, A. Z. (2007) Oceanic protists. Open Access Oceanography, 20 (SPL.ISS. 2). pp. 130-134. DOI 10.5670/oceanog.2007.57.

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Derelle, E., Ferraz, C., Rombauts, S., Rouzé, P., Worden, A. Z., Robbens, S., Partensky, F., Degroeve, S., Echeynié, S., Cooke, R., Saeys, Y., Wuyts, J., Jabbari, K., Bowler, C., Panaud, O., Piégu, B., Ball, S. G., Ral, J. P., Bouget, F. Y., Piganeau, G., De Baets, B., Pícard, A., Delseny, M., Demaille, J., Van De Peer, Y. and Moreau, H. (2006) Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Open Access Proceedings of the National Academy of Sciences of the United States of America (PNAS), 103 (31). pp. 11647-11652. DOI 10.1073/pnas.0604795103.

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Worden, A. Z. (2006) Picoeukaryote diversity in coastal waters of the Pacific Ocean. Open Access Aquatic Microbial Ecology, 43 (2). pp. 165-175. DOI 10.3354/ame043165.

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Worden, A. Z., Cuvelier, M. L. and Bartlett, D. H. (2006) In-depth analyses of marine microbial community genomics. Trends in Microbiology, 14 (8). pp. 331-336. DOI 10.1016/j.tim.2006.06.008.

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Worden, A. Z., Seidel, M., Smriga, S., Wick, A., Malfatti, F., Bartlett, D. and Azam, F. (2006) Trophic regulation of Vibrio cholerae in coastal marine waters. Environmental Microbiology, 8 (1). pp. 21-29. DOI 10.1111/j.1462-2920.2005.00863.x.

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Six, C., Worden, A. Z., Rodríguez, F., Moreau, H. and Partensky, F. (2005) New insights into the nature and phylogeny of prasinophyte antenna proteins: Ostreococcus tauri, a case study. Open Access Molecular Biology and Evolution, 22 (11). pp. 2217-2230. DOI 10.1093/molbev/msi220.

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Azam, F. and Worden, A. Z. (2004) Microbes, Molecules, and Marine Ecosystems. Science, 303 (5664). pp. 1622-1624. DOI 10.1126/science.1093892.

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Worden, A. Z., Nolan, J. K. and Palenik, B. (2004) Assessing the dynamics and ecology of marine picophytoplankton: The importance of the eukaryotic component. Limnology and Oceanography, 49 (1). pp. 168-179. DOI 10.4319/lo.2004.49.1.0168.

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Mourino-Perez, R. R., Worden, A. Z. and Azam, F. (2003) Growth of Vibrio cholerae O1 in Red Tide Waters off California. Applied and Environmental Microbiology, 69 (11). pp. 6923-6931. DOI 10.1128/AEM.69.11.6923-6931.2003.

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Worden, A. Z., Chisholm, S. W. and Binder, B. J. (2000) In situ hybridization of Prochlorococcus and Synechococcus (Marine Cyanobacteria) spp. with rRNA-targeted peptide nucleic acid probes. Applied and Environmental Microbiology, 66 (1). pp. 284-289. DOI 10.1128/AEM.66.1.284-289.2000.

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Binder, B. J., Chisholm, S. W., Olson, R. J., Frankel, S. L. and Worden, A. Z. (1996) Dynamics of picophytoplankton, ultraphytoplankton and bacteria in the central equatorial Pacific. Deep Sea Research Part II: Topical Studies in Oceanography, 43 (4-6). pp. 907-931. DOI 10.1016/0967-0645(96)00023-9.

Articles in a Scientific Journal - without review

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Worden, A. Z. and McRose, D. (2009) The otherness of the oceans. Nature, 459 (7244). pp. 166-167. DOI 10.1038/459166a.

Book chapters


Worden, A. Z. and Not, F. (2008) Ecology and Diversity of Picoeukaryotes. In: Microbial Ecology of the Oceans. . Wiley, Hoboken, NJ, USA, pp. 159-205. 2. ed. ISBN 9780470043448 DOI 10.1002/9780470281840.ch6.

This list was generated on Wed Jun 26 17:27:33 2019 CEST.